Third Party Software Utilized by PhyloFisher

• ASTRAL-III v. 5.7.3 (Zhang et al., 2018)
• BLAST v. 2.9.0 (Altschul et al., 1990)
• BMGE v. 1.1.2 (Criscuolo and Gribaldo, 2010)
• CD-HIT v. 4.8.1 (Fu et al., 2012)
• DIAMOND v. 09.24 (Buchfink et al., 2015)
• dist_est v.1.0 (Susko et al., 2003)
• Divver v. 1.01 (Ali et al., 2019)
• ETE3 3.1.1 (Huerta-Cepas et al., 2016)
• FastTree v. 2.1.11 (Price et al., 2010)
• HMMER v. 3.2.1 (Mistry et al., 2013)
• MAFFT v.7.455 (Katoh and Standley, 2013)
• MAMMaL v.1.1.1 (Susko et al., 2018)
• OrthoMCL v 5.0 (Chen et al., 2006)
• PREQUAL v. 1.02 (Whelan et al., 2018)
• RAxML v. 8.2.12 (Stamatakis, 2014)
• trimAl v.1.4.rev15 (Capella-Gutiérrez et al., 2009)

NOTE: Installation of the above software is handled by conda.